rs4230165 SNP Detail

Summary

• ID
  rs4230165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842073 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGTTCCTG CAGAAGCTCA GTCAAAAGAT TTCCTGATTC
  CTATTGGAAA AGCCAAAATT GAAAGGCAAG GGACCCACAT CACTGTAGTT GCCCATTCAA
  R
  CCCAGTGGGC CACTGCCTAG AAGCTGCAGC TGTATTGTCT AAAGAGGGAA TTGAATGTGA
  GGTAATAAAT CTGCGTACCA TCAGACCAAT GCACATTGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6393185	C81408_199	TWGNF	TWGNF-Mouse	f	SNP	G		G		G	G	G	G	A				G
ss45068777	mCV24645177	ABI	CRAMUS_MOUSE	f	SNP		G					G		A
ss50908892	NES13484776	PERLEGEN	MM_PANEL2	f	SNP			G	G		G		G	A	G	G	G		G
ss148476156	ENSMUSSNP1704011	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4230165					SNP	G	G	G	G	G	G	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393185	C81408_199	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss50908892	NES13484776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842073 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1359 bp downstream
Rr407423	regulatory region 407423	1520 bp distal
Rr407424	regulatory region 407424	1774 bp distal
Tssr5799	transcription start site region 5799	728 bp downstream