rs4230167 SNP Detail

Summary

• ID
  rs4230167
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTCAAGC CCAGTGGGCC ACTGCCTAGA AGCTGCAGCT
  GTATTGTCTA AAGAGGGAAT TGAATGTGAG GTAATAAATC TGCGTACCAT CAGACCAATG
  S
  ACATTGAAGC CATAGAAGCC AGTGTGATGA AGACATACCA TCTCGTGACT GTGGAAGGAG
  GCTGGCCACA ATTTGGAGTA GGAGCTGAGA TTTGTGCCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6393187	C81408_291	TWGNF	TWGNF-Mouse	f	SNP	C			C		C	C	C	G				G
ss45122469	mCV24645178	ABI	CRAMUS_MOUSE	f	SNP							C		G
ss50908888	NES13484778	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C		C	G	C	C	G		C
ss148476163	ENSMUSSNP1646810	ENSEMBL	ENSEMBL_Sanger	f	SNP									G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4230167					SNP	C	C	C	C	C	C	C	C	G	C	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393187	C81408_291	TWGNF	TWGNF-Mouse-2	f	SNP	C/G
ss50908888	NES13484778	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842165 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1267 bp downstream
Rr407423	regulatory region 407423	1612 bp distal
Rr407424	regulatory region 407424	1866 bp distal
Tssr5799	transcription start site region 5799	820 bp downstream