rs4230169 SNP Detail

Summary

• ID
  rs4230169
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTAATAAA TCTGCGTACC ATCAGACCAA TGCACATTGA
  AGCCATAGAA GCCAGTGTGA TGAAGACATA CCATCTCGTG ACTGTGGAAG GAGGCTGGCC
  M
  CAATTTGGAG TAGGAGCTGA GATTTGTGCC AGAATTATGG AAGGCCCTGC ATTCAACTTC
  CTTGATGCCC CTGCCGTTCC TGTCACTGGT GCTGATGTC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6393189	C81408_359	TWGNF	TWGNF-Mouse	f	SNP	A				A		C	A	A	A							A
ss45172416	mCV24645179	ABI	CRAMUS_MOUSE	f	SNP			A					A		C
ss50908882	NES13484781	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		A	C	A	A	A	A	A	A		A
ss148476169	ENSMUSSNP2150069	ENSEMBL	ENSEMBL_Sanger	f	SNP			A							C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4230169					SNP	A	A	A	A	A	A	?	A	A	C	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393189	C81408_359	TWGNF	TWGNF-Mouse-2	f	SNP	A/C
ss50908882	NES13484781	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842233 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1199 bp downstream
Rr407423	regulatory region 407423	1680 bp distal
Rr407424	regulatory region 407424	1934 bp distal
Tssr5799	transcription start site region 5799	888 bp downstream