rs4230171 SNP Detail

Summary

• ID
  rs4230171
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:4842313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAGGGA ATTGAATGTG
  AGGTAATAAA TCTGCGTACC ATCAGACCAA TGCACATTGA AGCCATAGAA GCCAGTGTGA
  TGAAGACATA CCATCTCGTG ACTGTGGAAG GAGGCTGGCC ACAATTTGGA GTAGGAGCTG
  AGATTTGTGC CAGAATTATG GAAGGCCCTG CATTCAACTT CCTTGATGCC CCTGCCGTTC
  S
  TGTCACTGGT GCTGATGTCC CTATGCCTTA CGCAAAGGTC CTAGAAGACA ACTCCGTACC
  TCAGGTCAAA GACATCATAT TTGCAGTAAG GAAGACTTTG AACATCTAAT TCGGACTTTG
  AATGTAAAGT CATTGAAATC TATTTAAAAT CCTTGGTGGG ACTTCACCTG ATGTGTACTG
  CGAGACTGCT AGTCATAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6393191	C81408_439	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4230171					SNP	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393191	C81408_439	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:4842313 () rs orientation: forward

Symbol	Name	Function Class
Gm6123	predicted gene 6123	within coordinates
Mrpl15	mitochondrial ribosomal protein L15	1119 bp downstream
Rr407423	regulatory region 407423	1760 bp distal
Tssr5799	transcription start site region 5799	968 bp downstream