rs4230622 SNP Detail

Summary

• ID
  rs4230622
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCAGACCAG GAAGTGAAAA
  TGACATTCAA ACTAAATTAT TTAAAACAAG GCATACCTCT CCCCAACTCA GTCTAAAGAC
  ACAATTTCAT TTTGAGAATG TTTACAGCCC ATTTAATTAA TCAGTGAACT AAAAGTCATA
  GAAATTGGAT TTGTGCAAAT GTAGAGAAAT CTACCATATT GGCTTCCAAA ATTTAAAAAT
  W
  TTATGCCACA GAACATTTCA TCCAAATCAG ATTTGTACAA TAGGGCACCT GAAAAGTGAC
  TGCAGCCTTT GGTTAATATG TCTTTCTTTT TCCTTTTTCC AGTGTTCTAG TTACATTAAT
  GAGAACAGAA ACATAAACTA TGACCTAGGG GTTTCTGTTG GATAGCTTGT AATTAAGAAC
  GGAGAAAGAA CAACAAAGAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6393646	AU018766_134	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4230622					SNP	T	T	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393646	AU018766_134	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309358 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	194 bp downstream
Rr498566	regulatory region 498566	1423 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	616 bp downstream
Tssr130397	transcription start site region 130397	746 bp downstream
Tssr130398	transcription start site region 130398	693 bp downstream
Tssr130399	transcription start site region 130399	604 bp downstream
Tssr130400	transcription start site region 130400	580 bp downstream
Tssr130401	transcription start site region 130401	572 bp downstream
Tssr130402	transcription start site region 130402	508 bp downstream
Tssr130403	transcription start site region 130403	461 bp downstream
Tssr130404	transcription start site region 130404	419 bp downstream
Tssr130405	transcription start site region 130405	401 bp downstream
Tssr130406	transcription start site region 130406	375 bp downstream
Tssr130407	transcription start site region 130407	339 bp downstream
Tssr130408	transcription start site region 130408	309 bp downstream
Tssr130409	transcription start site region 130409	292 bp downstream
Tssr130410	transcription start site region 130410	266 bp downstream
Tssr130411	transcription start site region 130411	218 bp downstream
Tssr130412	transcription start site region 130412	137 bp downstream
Tssr130413	transcription start site region 130413	98 bp upstream
Tssr130414	transcription start site region 130414	146 bp upstream
Tssr130415	transcription start site region 130415	220 bp upstream
Tssr130416	transcription start site region 130416	517 bp upstream
Tssr133563	transcription start site region 133563	639 bp upstream
Tssr133564	transcription start site region 133564	608 bp upstream
Tssr133565	transcription start site region 133565	564 bp upstream
Tssr133566	transcription start site region 133566	552 bp upstream
Tssr133567	transcription start site region 133567	301 bp upstream
Tssr133568	transcription start site region 133568	174 bp upstream