rs4230694 SNP Detail

Summary

• ID
  rs4230694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:34141507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             ACTGTCTTGG TTTAGTTTAC AGTTCTTTAA AAGTTCTAAA TTAAAACATT
  R
  AAAAATGCAA TTGACAGACA CTTGTATGAC TTACAAAGTT ATTTTTGATA           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6393718	AA409043_218	TWGNF	TWGNF-Mouse	f	SNP	G			A				A	A	A	A							G
ss39345730	mCV23546620	ABI	CRAMUS_MOUSE	f	SNP			G	A					A		A
ss49447068	NES12599722	PERLEGEN	MM_PANEL2	f	SNP		A		A	A	A	A	A			A	A	A	A	G	A	G		A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4230694					SNP	G	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393718	AA409043_218	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss49447068	NES12599722	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34141507 () rs orientation: forward

Symbol	Name	Function Class
Gm54692	predicted gene, 54692	1985 bp upstream
Mtdh	metadherin	within coordinates
Tssr131025	transcription start site region 131025	194 bp downstream
Tssr131026	transcription start site region 131026	1161 bp upstream
Tssr131027	transcription start site region 131027	1599 bp upstream
Tssr131028	transcription start site region 131028	1700 bp upstream