rs4230835 SNP Detail

Summary

• ID
  rs4230835
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900475 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTG CCTCAGTTTC CCCATTTACA
  K
  AGCAGGGATG GTGGTGGTGC CTGCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss6393860	AI325109_68	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs4230835					SNP	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393860	AI325109_68	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900475 () rs orientation: reverse

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	377 bp downstream
Gm52199	predicted gene, 52199	1215 bp upstream
Mb	myoglobin	Intron
Rr504917	regulatory region 504917	1881 bp distal
Rr504918	regulatory region 504918	789 bp distal
Tssr131853	transcription start site region 131853	488 bp downstream
Tssr131854	transcription start site region 131854	437 bp downstream
Tssr131855	transcription start site region 131855	319 bp downstream
Tssr131856	transcription start site region 131856	239 bp downstream
Tssr131857	transcription start site region 131857	1356 bp upstream
Tssr131858	transcription start site region 131858	1432 bp upstream
Tssr135064	transcription start site region 135064	197 bp upstream
Tssr135065	transcription start site region 135065	1369 bp downstream