rs4230838 SNP Detail

Summary

• ID
  rs4230838
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900347 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAACA GTCCTATAGT AAGGAGAAGG
  K
  CAGTGAGTAC ACACCCCCTT AGCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss6393863	AI325109_196	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs4230838					SNP	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393863	AI325109_196	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900347 () rs orientation: reverse

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	249 bp downstream
Gm52199	predicted gene, 52199	1087 bp upstream
Mb	myoglobin	Intron
Rr504917	regulatory region 504917	1753 bp distal
Rr504918	regulatory region 504918	661 bp distal
Tssr131853	transcription start site region 131853	360 bp downstream
Tssr131854	transcription start site region 131854	309 bp downstream
Tssr131855	transcription start site region 131855	191 bp downstream
Tssr131856	transcription start site region 131856	111 bp downstream
Tssr131857	transcription start site region 131857	1484 bp upstream
Tssr131858	transcription start site region 131858	1560 bp upstream
Tssr135064	transcription start site region 135064	69 bp upstream
Tssr135065	transcription start site region 135065	1497 bp downstream