rs4230839 SNP Detail

Summary

• ID
  rs4230839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900258 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CTTTC TTGCAGTTTA TCTCAGAAAT
  Y
  ATCATTGAAG TCCTGAAGAA GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6393864	AI325109_285	TWGNF	TWGNF-Mouse	f	SNP	T		T		T		T	T	C									C
ss8596622	WI_WGS_15_77516495	WI	MOUSE	r	SNP								A		G
ss48053833	NES12082217	PERLEGEN	MM_PANEL2	r	SNP		A	A	A	A	A	A		G		A	A	A	G	A	A	G		G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	CZECHII/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4230839					SNP	T	T	T	T	T	T	T	T	C	C	T	T	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393864	AI325109_285	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss48053833	NES12082217	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900258 () rs orientation: reverse

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	160 bp downstream
Gm52199	predicted gene, 52199	998 bp upstream
Mb	myoglobin	Coding-Synonymous
Rr504917	regulatory region 504917	1664 bp distal
Rr504918	regulatory region 504918	572 bp distal
Tssr131853	transcription start site region 131853	271 bp downstream
Tssr131854	transcription start site region 131854	220 bp downstream
Tssr131855	transcription start site region 131855	102 bp downstream
Tssr131856	transcription start site region 131856	22 bp downstream
Tssr131857	transcription start site region 131857	1573 bp upstream
Tssr131858	transcription start site region 131858	1649 bp upstream
Tssr135064	transcription start site region 135064	1 bp downstream
Tssr135065	transcription start site region 135065	1586 bp downstream