rs4230841 SNP Detail

Summary

• ID
  rs4230841
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900201 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAC TTTGGAGCAG ATGCTCAGGG
  Y
  GCCATGAGCA AGGCCCTGGA GCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss6393866	AI325109_342	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs4230841					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393866	AI325109_342	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900201 () rs orientation: reverse

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	103 bp downstream
Gm52199	predicted gene, 52199	941 bp upstream
Mb	myoglobin	Coding-Synonymous
Rr504917	regulatory region 504917	1607 bp distal
Rr504918	regulatory region 504918	515 bp distal
Tssr131853	transcription start site region 131853	214 bp downstream
Tssr131854	transcription start site region 131854	163 bp downstream
Tssr131855	transcription start site region 131855	45 bp downstream
Tssr131856	transcription start site region 131856	11 bp upstream
Tssr131857	transcription start site region 131857	1630 bp upstream
Tssr131858	transcription start site region 131858	1706 bp upstream
Tssr135064	transcription start site region 135064	58 bp downstream
Tssr135065	transcription start site region 135065	1643 bp downstream