rs4230843 SNP Detail

Summary

• ID
  rs4230843
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78232701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG GAGACCTCAG GGAGCCCTTC
  Y
  GTGGAGCCAA AGGAGAACCC TCCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
ss6393868	M29855_37	TWGNF	TWGNF-Mouse	f	SNP			C	T	C
ss39403142	mCV27573776	ABI	CRAMUS_MOUSE	f	SNP	C	C		T		T
ss148183115	ENSMUSSNP6928339	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				T
ss325024509	CHEV_15_78178931	CHEVERUD	SCREENING_POP	f	SNP							T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J
rs4230843					SNP	C	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393868	M29855_37	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78232701 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	98 bp upstream
Rr505249	regulatory region 505249	92 bp distal
Tssr131932	transcription start site region 131932	422 bp downstream
Tssr131933	transcription start site region 131933	338 bp downstream
Tssr131934	transcription start site region 131934	272 bp downstream
Tssr131935	transcription start site region 131935	210 bp downstream
Tssr131936	transcription start site region 131936	445 bp upstream
Tssr131937	transcription start site region 131937	472 bp upstream
Tssr131938	transcription start site region 131938	526 bp upstream
Tssr131939	transcription start site region 131939	594 bp upstream
Tssr131940	transcription start site region 131940	667 bp upstream
Tssr131941	transcription start site region 131941	761 bp upstream
Tssr131942	transcription start site region 131942	799 bp upstream