rs4230844 SNP Detail

Summary

• ID
  rs4230844
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78232802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                GTGTGGGT CCAGCCTGGA
  GACCTCAGGG AGCCCTTCTG TGGAGCCAAA GGAGAACCCT CCAGTTGAGC TGAGCATGGA
  GGAAACAGGA GGCACGGGAC AACCCAGTGA CTCTGCCCAT AAGCTCTGGG GGCCCTGAGG
  R
  CAGTATGATG GCCTCTGATT ATGTCACTCC TGGAGATCCG GTGCTCACTC TGCCCACAGG
  GCCCCTGTCT ACCTCTCTGG GCCCCTCTCT AGGGTTGCCC TCAGCCCAAA GCCCCAGTCT
  CTGTCTTAAG CTGCCCAGGG TCCCCTCTGG AAGCCCAGCT CTAGGGCCAC CAGGGTTTGA
  GGACTATGTG GAGCTGCCTC CAAGTGTGAG CCAGGCTGCC AAGTCCCCTC CAGGCCATCC
  TGCTCCTCCT GTGGCAAGCA GCCCCACAGT GATCCCAGGA GAGCCCAGGG AGGAA     
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6393869	M29855_139	TWGNF	TWGNF-Mouse	f	SNP	A	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4230844					SNP	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6393869	M29855_139	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78232802 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	within coordinates
Rr505249	regulatory region 505249	193 bp distal
Tssr131932	transcription start site region 131932	523 bp downstream
Tssr131933	transcription start site region 131933	439 bp downstream
Tssr131934	transcription start site region 131934	373 bp downstream
Tssr131935	transcription start site region 131935	311 bp downstream
Tssr131936	transcription start site region 131936	344 bp upstream
Tssr131937	transcription start site region 131937	371 bp upstream
Tssr131938	transcription start site region 131938	425 bp upstream
Tssr131939	transcription start site region 131939	493 bp upstream
Tssr131940	transcription start site region 131940	566 bp upstream
Tssr131941	transcription start site region 131941	660 bp upstream
Tssr131942	transcription start site region 131942	698 bp upstream