rs4231220 SNP Detail

Summary

• ID
  rs4231220
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:55796263 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCATA CACACAAATT TTGAAATATA
  M
  AGAAAAACTG TATGAGAATA AGATA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6394251	C77534_244	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4231220					SNP	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394251	C77534_244	TWGNF	TWGNF-Mouse-2	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55796263 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm28037	predicted gene, 28037			within coordinates
Rr517158	regulatory region 517158			1941 bp distal
Rr517159	regulatory region 517159			793 bp distal
Tssr138803	transcription start site region 138803			693 bp downstream
Tssr141546	transcription start site region 141546			1375 bp upstream
Tssr141547	transcription start site region 141547			1293 bp upstream
Zbtb11	zinc finger and BTB domain containing 11			Intron
				Noncoding-Transcript-Variant
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1			1283 bp upstream