rs4231221 SNP Detail

Summary

• ID
  rs4231221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:55796140 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACAAA GTTGGTAAAC CTAACAAAAA
  Y
  TAGCATCTAG AACAAATGAG ATGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6394253	C77534_367	TWGNF	TWGNF-Mouse	f	SNP	C				C		C	C	T	C
ss60465930	NES16445959	PERLEGEN	MM_PANEL2	r	SNP		G	G	G	G	G	G		A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4231221					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394253	C77534_367	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss60465930	NES16445959	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:55796140 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi8325	CpG island 8325	947 bp distal
Gm28037	predicted gene, 28037	within coordinates
Rr404882	regulatory region 404882	1916 bp downstream
Tssr138799	transcription start site region 138799	1977 bp downstream
Tssr138800	transcription start site region 138800	1947 bp downstream
Tssr138801	transcription start site region 138801	1913 bp downstream
Tssr138802	transcription start site region 138802	1885 bp downstream
Tssr138803	transcription start site region 138803	570 bp downstream
Tssr141546	transcription start site region 141546	1252 bp upstream
Tssr141547	transcription start site region 141547	1170 bp upstream
Zbtb11	zinc finger and BTB domain containing 11	within coordinates
Zbtb11os1	zinc finger and BTB domain containing 11, opposite strand 1	1160 bp upstream