rs4231343 SNP Detail

Summary

• ID
  rs4231343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23893812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTGTGA CTTTTCCCGA
  AGCCCTGCCA CCACTCAGGT AGGCACCTCC CCTTGAGGGC CTTCTAGAGG ATCACATTCG
  GTCCTCAGAG CCCCTCCTCA CTCTCTGCCT CATCGTGCTA TTTTTAGCTT CTAGCCAACT
  TGTGCTGTTT TCCATCTTTG GCTCCAGGCG ACCTGGACCT GGTAGGAGGT GGCACTGCCA
  R
  GCCAGCCTTC TGCCCTGTTC TTTCAATCTT TTTTTCTTCT TTTAGGAGCC CTTGCCCAGA
  GCTGCTTCTC TGGCGCTATC CCGGGAGCCT GATTCCTGAA GCCCTCAGGC TGCTGAGGCT
  GGGGGATACC CCCAGTCCCT ACTACCCTGC GTCCCCAGCT GGGGATATCG TGGAGCTCTG
  AGTATTGATG GCCTGTGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6394385	AI255180_56	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4231343					SNP	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394385	AI255180_56	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23893812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	725 bp distal
Cpgi8683	CpG island 8683	1602 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	within coordinates
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1093 bp downstream
Thoc6	THO complex 6	956 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	607 bp downstream
Tssr142940	transcription start site region 142940	1186 bp downstream
Tssr142941	transcription start site region 142941	851 bp downstream
Tssr142942	transcription start site region 142942	837 bp downstream
Tssr146635	transcription start site region 146635	1261 bp upstream
Tssr146636	transcription start site region 146636	951 bp upstream
Tssr146637	transcription start site region 146637	221 bp downstream
Tssr146638	transcription start site region 146638	1013 bp downstream
Tssr146639	transcription start site region 146639	1724 bp downstream
Tssr146640	transcription start site region 146640	1749 bp downstream
Tssr146641	transcription start site region 146641	1803 bp downstream
Tssr146642	transcription start site region 146642	1822 bp downstream