rs4231344 SNP Detail

Summary

• ID
  rs4231344
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23893936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCC CTCAGGCTGC TGAGGCTGGG
  R
  GATACCCCCA GTCCCTACTA CCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss6394386	AI255180_180	TWGNF	TWGNF-Mouse	f	SNP			A		A			G						G					A
ss16382254	17.023.266	TWGNF	TWGNF-Mouse-2	f	SNP	A	A	A	G	A	A	G	G	G	A	G	G	G	G	G	A	G	A	A	G	G	G	G	A	A	A	G	G	G	A	A	G	A	G	G	G	A	A	G	G	G	G	G	A	G	A
ss39575725	mCV24340144	ABI	CRAMUS_MOUSE	f	SNP		A	A					G											A
ss145330309	ENSMUSSNP2286791	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A																A
ss325326754	CHEV_17_23811929	CHEVERUD	SCREENING_POP	f	SNP																									A																G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BLKS/J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MSM/Ms	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	PWD/Ph	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs4231344					SNP	A	A	A	G	A	A	G	G	G	A	G	G	G	G	G	A	G	A	A	G	G	G	G	A	A	A	G	G	G	A	A	G	A	G	G	G	A	A	G	G	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394386	AI255180_180	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23893936 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	849 bp distal
Cpgi8683	CpG island 8683	1478 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	within coordinates
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1217 bp downstream
Thoc6	THO complex 6	1080 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	483 bp downstream
Tssr142940	transcription start site region 142940	1310 bp downstream
Tssr142941	transcription start site region 142941	975 bp downstream
Tssr142942	transcription start site region 142942	961 bp downstream
Tssr146635	transcription start site region 146635	1385 bp upstream
Tssr146636	transcription start site region 146636	1075 bp upstream
Tssr146637	transcription start site region 146637	97 bp downstream
Tssr146638	transcription start site region 146638	889 bp downstream
Tssr146639	transcription start site region 146639	1600 bp downstream
Tssr146640	transcription start site region 146640	1625 bp downstream
Tssr146641	transcription start site region 146641	1679 bp downstream
Tssr146642	transcription start site region 146642	1698 bp downstream