rs4231345 SNP Detail

Summary

• ID
  rs4231345
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23893982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGGGGGATAC CCCCAGTCCC TACTACCCTG CGTCCCCAGC TGGGGATATC
  K
  TGGAGCTCTG AGTATTGATG GCCTGTGTCC CTCCCTATCT TCTTTCTGAC           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
ss6394387	AI255180_226	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J
rs4231345					SNP	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394387	AI255180_226	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23893982 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8682	CpG island 8682	895 bp distal
Cpgi8683	CpG island 8683	1432 bp proximal
Hcfc1r1	host cell factor C1 regulator 1 (XPO1-dependent)	within coordinates
Rr339270	regulatory region 339270	within coordinates
Rr405075	regulatory region 405075	1263 bp downstream
Thoc6	THO complex 6	1126 bp upstream
Tnfrsf12a	tumor necrosis factor receptor superfamily, member 12a	437 bp downstream
Tssr142940	transcription start site region 142940	1356 bp downstream
Tssr142941	transcription start site region 142941	1021 bp downstream
Tssr142942	transcription start site region 142942	1007 bp downstream
Tssr146635	transcription start site region 146635	1431 bp upstream
Tssr146636	transcription start site region 146636	1121 bp upstream
Tssr146637	transcription start site region 146637	51 bp downstream
Tssr146638	transcription start site region 146638	843 bp downstream
Tssr146639	transcription start site region 146639	1554 bp downstream
Tssr146640	transcription start site region 146640	1579 bp downstream
Tssr146641	transcription start site region 146641	1633 bp downstream
Tssr146642	transcription start site region 146642	1652 bp downstream