rs4231371 SNP Detail

Summary

• ID
  rs4231371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380640 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACTCT TCAAGAACTG CACCACTGCC
  Y
  GACACAGACA GCAACTACTG TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
ss6394413	AW538136_19	TWGNF	TWGNF-Mouse	f	SNP	T			C		T		T	C	C	C							C
ss48356199	NES12249609	PERLEGEN	MM_PANEL2	r	SNP		A		G	A	A	A			G	G	A	G	G	G	G	G		G
ss145379506	ENSMUSSNP5757490	ENSEMBL	ENSEMBL_Sanger	r	SNP			A	G							G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SPRET/EiJ	WSB/EiJ
rs4231371					SNP	T	T	T	C	T	T	T	T	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394413	AW538136_19	TWGNF	TWGNF-Mouse-2	f	SNP	C/T
ss48356199	NES12249609	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380640 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc154	coiled-coil domain containing 154			795 bp upstream
Clcn7	chloride channel, voltage-sensitive 7			mRNA-UTR
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			1090 bp downstream
Tssr143140	transcription start site region 143140			1967 bp downstream
Tssr143141	transcription start site region 143141			775 bp upstream