rs4231372 SNP Detail

Summary

• ID
  rs4231372
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380496 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                     AA GAACTGCACC ACTGCCCGAC ACAGACAGCA GCTACTGTTT
  AAAGTGCCAT CTGCACTTGT TTATCACCAT GCTGAGTGCC TGACTCCCCA GAATGCTGAG
  CCCAAGGCAG AGAACAGGGG GCTCTCATTT CTCATTCCAG ATTCAACATA CTTAGCCCAT
  Y
  TCTTCATGGA AGGAAGAGCC GCTCTTTTGG AGGGACAACT GAAAGGCAGG AGCTGCCAGC
  TTTCCAAAGA AAGACCCTGT GTGACCTTAT AACAGACTTG TGCCAGAGAC ACTGCAACTA
  TCTTTACAAA GTTCCCAGGG GAGAAGACCC TGAAGGTGAG TGAAGGATGT CAGTGGGGCC
  AGCTTTGACA ACACAGGGTT CAGGGGTGAA GTTCCTTGGC TCTGGTGCTC ACGGGTCTAT
  CCATCCTAGG GCTACCCCAG GATGGCCAGG CCCTGGGAGG CCACTTCCCA AGGGCATACC
  ACACAGTACA GTAGTAAGCA AGCTAC                                     
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394414	AW538136_163	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231372					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394414	AW538136_163	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380496 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc154	coiled-coil domain containing 154	939 bp upstream
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	946 bp downstream
Tssr143140	transcription start site region 143140	1823 bp downstream
Tssr143141	transcription start site region 143141	919 bp upstream