rs4231374 SNP Detail

Summary

• ID
  rs4231374
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380474 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                               AAGA
  ACTGCACCAC TGCCCGACAC AGACAGCAGC TACTGTTTAA AGTGCCATCT GCACTTGTTT
  ATCACCATGC TGAGTGCCTG ACTCCCCAGA ATGCTGAGCC CAAGGCAGAG AACAGGGGGC
  TCTCATTTCT CATTCCAGAT TCAACATACT TAGCCCATCT CTTCATGGAA GGAAGAGCCG
  Y
  TCTTTTGGAG GGACAACTGA AAGGCAGGAG CTGCCAGCTT TCCAAAGAAA GACCCTGTGT
  GACCTTATAA CAGACTTGTG CCAGAGACAC TGCAACTATC TTTACAAAGT TCCCAGGGGA
  GAAGACCCTG AAGGTGAGTG AAGGATGTCA GTGGGGCCAG CTTTGACAAC ACAGGGTTCA
  GGGGTGAAGT TCCTTGGCTC TGGTGCTCAC GGGTCTATCC ATCCTAGGGC TACCCCAGGA
  TGGCCAGGCC CTGGGAGGCC ACTTCCCAAG GGCATACCAC ACAGTACAGT AGTAAGCAAG
  CTAC                                                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394416	AW538136_185	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231374					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394416	AW538136_185	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380474 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc154	coiled-coil domain containing 154	961 bp upstream
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	924 bp downstream
Tssr143140	transcription start site region 143140	1801 bp downstream
Tssr143141	transcription start site region 143141	941 bp upstream