rs4231378 SNP Detail

Summary

• ID
  rs4231378
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380412 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCTTT CCAAAGAAAG ACCCTGTGTG
  R
  CCTTATAACA GACTTGTGCC AGAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss6394420	AW538136_247	TWGNF	TWGNF-Mouse	f	SNP	G			G		G			G	A					A				G																							A
ss16382264	C17.022.690	TWGNF	TWGNF-Mouse-2	f	SNP		G	G	G		G	G	G	G	A	A	A	A	A	G	G	G	A	G	A	G	G	A	G		G	G	A	A	A	G	G	A	A	A		G	G	G	G	A	G	G	G	G
ss48356201	NES12249607	PERLEGEN	MM_PANEL2	r	SNP		T		C	C		C												C					C					T		C		T			T									C
ss145379494	ENSMUSSNP979804	ENSEMBL	ENSEMBL_Sanger	r	SNP			C	C															C
ss325336436	CHEV_17_25298383	CHEVERUD	SCREENING_POP	r	SNP																									C																T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWD/Ph	PWD/PhJ	RIIIS/J	SEA/GnJ	SEG/Pas	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs4231378					SNP	G	?	G	G	G	G	G	G	G	A	A	A	A	A	?	G	G	A	G	A	G	G	A	G	G	G	G	A	A	A	G	G	A	A	A	A	G	G	G	G	A	?	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394420	AW538136_247	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss48356201	NES12249607	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380412 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc154	coiled-coil domain containing 154			1023 bp upstream
Clcn7	chloride channel, voltage-sensitive 7			mRNA-UTR
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			862 bp downstream
Tssr143140	transcription start site region 143140			1739 bp downstream
Tssr143141	transcription start site region 143141			1003 bp upstream