rs4231380 SNP Detail

Summary

• ID
  rs4231380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380397 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCCT GTGTGACCTT ATAACAGACT
  Y
  GTGCCAGAGA CACTGCAACT ATCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394422	AW538136_262	TWGNF	TWGNF-Mouse	f	SNP	C		T	C	C	T	T	T	T
ss145379484	ENSMUSSNP6102855	ENSEMBL	ENSEMBL_Sanger	r	SNP		G	A					A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231380					SNP	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394422	AW538136_262	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380397 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc154	coiled-coil domain containing 154	1038 bp upstream
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	847 bp downstream
Tssr143140	transcription start site region 143140	1724 bp downstream
Tssr143141	transcription start site region 143141	1018 bp upstream