rs4231382 SNP Detail

Summary

• ID
  rs4231382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380347 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTACA AAGTTCCCAG GGGAGAAGAC
  Y
  CTGAAGGTGA GTGAAGGATG TCAGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
ss6394424	AW538136_312	TWGNF	TWGNF-Mouse	f	SNP	T		T	T	T	C	C	T			C
ss145379471	ENSMUSSNP5815082	ENSEMBL	ENSEMBL_Sanger	r	SNP		A	A
ss325336434	CHEV_17_25298318	CHEVERUD	SCREENING_POP	r	SNP									A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	SM/J	SPRET/EiJ
rs4231382					SNP	T	T	T	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394424	AW538136_312	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380347 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc154	coiled-coil domain containing 154			1088 bp upstream
Clcn7	chloride channel, voltage-sensitive 7			mRNA-UTR
				Noncoding-Transcript-Variant
Mir12188	microRNA 12188			797 bp downstream
Tssr143140	transcription start site region 143140			1674 bp downstream
Tssr143141	transcription start site region 143141			1068 bp upstream