rs4231383 SNP Detail

Summary

• ID
  rs4231383
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25380332 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GGGAG AAGACCCTGA AGGTGAGTGA
  R
  GGATGTCAGT GGGGCCAGCT TTGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
ss6394425	AW538136_327	TWGNF	TWGNF-Mouse	f	SNP	G			G	G	G	A	A	G						A
ss48356202	NES12249606	PERLEGEN	MM_PANEL2	r	SNP		C									T	T	T
ss145379467	ENSMUSSNP6252675	ENSEMBL	ENSEMBL_Sanger	r	SNP			C	C					C
ss325336433	CHEV_17_25298303	CHEVERUD	SCREENING_POP	r	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	SPRET/EiJ
rs4231383					SNP	G	G	G	G	G	G	A	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394425	AW538136_327	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss48356202	NES12249606	PERLEGEN	MM_PANEL	r	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25380332 () rs orientation: reverse

Symbol	Name	Function Class
Ccdc154	coiled-coil domain containing 154	1103 bp upstream
Clcn7	chloride channel, voltage-sensitive 7	within coordinates
Mir12188	microRNA 12188	782 bp downstream
Tssr143140	transcription start site region 143140	1659 bp downstream
Tssr143141	transcription start site region 143141	1083 bp upstream