rs4231549 SNP Detail

Summary

• ID
  rs4231549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:56324482 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                            CTCAGC TACGTGCAGG TGCTGGTGCC TCTGCCTCAG
  TGACTGGGCC TTTACACCGC TGCCAGTCAC AGTGCAGCAG CAGTCTAATG CCAAGGTGCT
  Y
  TAGAAACACT AATGTTCCTC CAGGGGGGAC TCCTCCCCAC TCCCTCAGCC CTGGGGCCCC
  CCTATCCTAA GACTCGGAAA GGCCCACCCT GAGGTTCTAT TGCCTTCCTG GTGGTATCAG
  CTTCCAGCTG TTTCAACCCT TCCCAGCCCG TTGCTGGCGA TGGGCCCATG CCCCCTCTCC
  AGGCTCTCTA GAGGCAGGCA GGTCCTTGGA ATCCCCAGCC TGCAAGCAGA GGCTGGCCAG
  CTCCCCAGCT CAGCACACAG AGACACCTGG CACCTGCTGC TCATGAAGAA GTGCACA   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J
ss6394596	C77078_97	TWGNF	TWGNF-Mouse	f	SNP	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J
rs4231549					SNP	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394596	C77078_97	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:56324482 () rs orientation: reverse

Symbol	Name	Function Class
Mpnd	MPN domain containing	692 bp downstream
Rr528927	regulatory region 528927	1028 bp proximal
Sh3gl1	SH3-domain GRB2-like 1	mRNA-UTR
Tssr148733	transcription start site region 148733	24 bp upstream