rs4231717 SNP Detail

Summary

• ID
  rs4231717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:85335882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCCTCCT CCCGACCCCC
  TTTATTGAAC TTTACGCAAT CTTCCTTGGC TGGACAAAGT CCAGCCATGA TTATTTATAA
  ACCATTCAAA GCTCATTAAC AAAGCACAGC GCTCAGCAAG ACACCTTTCT ACCTCTGTCC
  CTGCTGGAAA GCACCAGGAA GAGCTACACA GGGTAGACAT GGATGAGGAC AAAGGCAAGA
  R
  AGACCCCATC CAAATGAGTT TGAAGGGATG CCGAACCAAT AACGGGTTTG TCCAAAATGA
  AGACATTCCG GAGCAGGACC CAGACCCAGG CTCCAGGGAC ACCCCACAGC CCAACGCCGT
  GAGTATCCCT GCTCCAGAGG AGCCTCACCT AAAGGCGGTG CGGCCCTATG CAGGGATGCC
  CAAGGAAGTA CTCTTCCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394764	D88533_16	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231717					SNP	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394764	D88533_16	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:85335882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9577	CpG island 9577	214 bp proximal
Rr340285	regulatory region 340285	within coordinates
Slc3a1	solute carrier family 3, member 1	within coordinates
Tssr146075	transcription start site region 146075	486 bp downstream
Tssr146076	transcription start site region 146076	50 bp downstream