rs4231892 SNP Detail

Summary

• ID
  rs4231892
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61120690 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TTTGT TTCTTTCTCT CTCTCTCTCT
  Y
  TTTTTTTTCA TCTGGAGGGT ATTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394940	R74975_51	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231892					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394940	R74975_51	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61120690 () rs orientation: reverse

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Rr538733	regulatory region 538733	35 bp proximal
Rr538734	regulatory region 538734	1409 bp proximal
Rr538735	regulatory region 538735	1676 bp proximal
Tssr151379	transcription start site region 151379	1936 bp downstream
Tssr151380	transcription start site region 151380	1865 bp downstream
Tssr151381	transcription start site region 151381	1833 bp downstream
Tssr151382	transcription start site region 151382	1721 bp downstream
Tssr151383	transcription start site region 151383	1691 bp downstream
Tssr151384	transcription start site region 151384	1649 bp downstream
Tssr151385	transcription start site region 151385	1599 bp downstream
Tssr151386	transcription start site region 151386	1547 bp downstream
Tssr151387	transcription start site region 151387	1508 bp downstream
Tssr151388	transcription start site region 151388	1484 bp downstream
Tssr151389	transcription start site region 151389	70 bp downstream
Tssr151390	transcription start site region 151390	128 bp upstream
Tssr151391	transcription start site region 151391	316 bp upstream