rs4231894 SNP Detail

Summary

• ID
  rs4231894
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61120680 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGAACAAAAC CCTAAACAAA
  TAGTAACAAA GAAGCCAGCA CGGGGCCTGG CAAACGCATT CCCCCAAGGC TCTCCCTTTG
  AAGGGGGGTG GGGAAGCCAT GGGGCAGGAT TTGAGCTATG GTGCATAGAG CTGGAGACGC
  TTTTCCTATA AATGTGATTT GACTCTTTGT TTCTTTCTCT CTCTCTCTCT TTTTTTTTTC
  W
  TCTGGAGGGT ATTTGGACGG AGCATGGAGC TTGTCAGATG AGGGTGGGCT CTGGACAGTT
  TTTCTGCCTG TTCCCCTGCC TGTCACCTTG GGGCCATCGT AGTGTCCCAA GGTCTTCATT
  AGTTGGCTGC CCACCCACAG GAGCGGCCTC TGCAGAGGGG GCCGTCTCAG ACTGGGGCAG
  GGACTTGCCT CCACTTCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394942	R74975_61	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231894					SNP	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394942	R74975_61	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61120680 () rs orientation: reverse

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Rr538733	regulatory region 538733	45 bp proximal
Rr538734	regulatory region 538734	1419 bp proximal
Rr538735	regulatory region 538735	1686 bp proximal
Tssr151379	transcription start site region 151379	1926 bp downstream
Tssr151380	transcription start site region 151380	1855 bp downstream
Tssr151381	transcription start site region 151381	1823 bp downstream
Tssr151382	transcription start site region 151382	1711 bp downstream
Tssr151383	transcription start site region 151383	1681 bp downstream
Tssr151384	transcription start site region 151384	1639 bp downstream
Tssr151385	transcription start site region 151385	1589 bp downstream
Tssr151386	transcription start site region 151386	1537 bp downstream
Tssr151387	transcription start site region 151387	1498 bp downstream
Tssr151388	transcription start site region 151388	1474 bp downstream
Tssr151389	transcription start site region 151389	60 bp downstream
Tssr151390	transcription start site region 151390	138 bp upstream
Tssr151391	transcription start site region 151391	326 bp upstream