rs4231896 SNP Detail

Summary

• ID
  rs4231896
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61120622 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GTCAG ATGAGGGTGG GCTCTGGACA
  R
  TTTTTCTGCC TGTTCCCCTG CCTGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6394944	R74975_119	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231896					SNP	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6394944	R74975_119	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61120622 () rs orientation: reverse

Symbol	Name	Function Class
Camk2a	calcium/calmodulin-dependent protein kinase II alpha	within coordinates
Rr538733	regulatory region 538733	103 bp proximal
Rr538734	regulatory region 538734	1477 bp proximal
Rr538735	regulatory region 538735	1744 bp proximal
Tssr151379	transcription start site region 151379	1868 bp downstream
Tssr151380	transcription start site region 151380	1797 bp downstream
Tssr151381	transcription start site region 151381	1765 bp downstream
Tssr151382	transcription start site region 151382	1653 bp downstream
Tssr151383	transcription start site region 151383	1623 bp downstream
Tssr151384	transcription start site region 151384	1581 bp downstream
Tssr151385	transcription start site region 151385	1531 bp downstream
Tssr151386	transcription start site region 151386	1479 bp downstream
Tssr151387	transcription start site region 151387	1440 bp downstream
Tssr151388	transcription start site region 151388	1416 bp downstream
Tssr151389	transcription start site region 151389	2 bp downstream
Tssr151390	transcription start site region 151390	196 bp upstream
Tssr151391	transcription start site region 151391	384 bp upstream