rs4231985 SNP Detail

Summary

• ID
  rs4231985
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603927 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                    TACT CCATCTTCTT
  S
  ATTTATCAAT GCATGGCCTC CTCAACGTGC CCCTTGAGGT ATTCTCCCAA GGGCACCGTG
  AAGCAACCCG GTGCCCCTGA GGAAGAGCCC TCCACCCTGC GACGAGGCTG TGCTTCACTC
  GGGCTCACGC CTACAGGCTG CCGTGCAAAA TGAGACACCT GGGCAAAGAT CATTGCAAGT
  TTATTATTTT ATTTCAATAT TCAAGAATAG TAGGTGCTTC TGTCCAGCCA TACTGCAGCT
  GCGCTGTCTG GACGAAGCCA TGGGCAAGGT CGTTCAGTCA CACTGGAGGG CAAACACTCC
  CGTGGGACAA TCTGGAGGGT TTTTTTCTGG AAATTTCTTC CCTGCTTTTT CTCTTACCCT
  CACGTTATTG TGGCGATACA TTAATCGGTG TTATCTTAAA CCCACACTCT ACTCAGAGTT
  AGAACAGATT AACAAGATGC AGTA                                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395033	R75289_15	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231985					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395033	R75289_15	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603927 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	658 bp proximal
Gm58829	predicted gene, 58829	164 bp upstream
Mbp	myelin basic protein	165 bp downstream
Rr541827	regulatory region 541827	1667 bp distal
Tssr152152	transcription start site region 152152	1677 bp downstream
Tssr152153	transcription start site region 152153	1553 bp downstream
Tssr152154	transcription start site region 152154	1530 bp downstream
Tssr152155	transcription start site region 152155	1494 bp downstream
Tssr152156	transcription start site region 152156	1425 bp downstream
Tssr152157	transcription start site region 152157	1347 bp downstream
Tssr152158	transcription start site region 152158	1310 bp downstream
Tssr152159	transcription start site region 152159	1286 bp downstream
Tssr152160	transcription start site region 152160	1240 bp downstream
Tssr152161	transcription start site region 152161	1224 bp downstream
Tssr152162	transcription start site region 152162	1203 bp downstream
Tssr152163	transcription start site region 152163	1186 bp downstream
Tssr152164	transcription start site region 152164	1141 bp downstream
Tssr152165	transcription start site region 152165	1068 bp downstream
Tssr152166	transcription start site region 152166	1032 bp downstream
Tssr152167	transcription start site region 152167	1000 bp downstream
Tssr152168	transcription start site region 152168	971 bp downstream
Tssr152169	transcription start site region 152169	918 bp downstream
Tssr152170	transcription start site region 152170	810 bp downstream
Tssr152171	transcription start site region 152171	766 bp downstream
Tssr152172	transcription start site region 152172	663 bp downstream
Tssr152173	transcription start site region 152173	648 bp downstream
Tssr152174	transcription start site region 152174	614 bp downstream
Tssr152175	transcription start site region 152175	579 bp downstream
Tssr152176	transcription start site region 152176	390 bp downstream
Tssr152177	transcription start site region 152177	210 bp downstream
Tssr154083	transcription start site region 154083	1572 bp upstream
Tssr154084	transcription start site region 154084	1518 bp upstream
Tssr154085	transcription start site region 154085	1261 bp upstream
Tssr154086	transcription start site region 154086	715 bp upstream
Tssr154087	transcription start site region 154087	494 bp upstream
Tssr154088	transcription start site region 154088	465 bp upstream
Tssr154089	transcription start site region 154089	347 bp upstream
Tssr154090	transcription start site region 154090	287 bp upstream