rs4231986 SNP Detail

Summary

• ID
  rs4231986
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603926 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACATC ACCTCTACTC CATCTTCTTG
  R
  TTTATCAATG CATGGCCTCC TCAAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss6395034	R75289_16	TWGNF	TWGNF-Mouse	f	SNP	G			A		A			A	A					G				A
ss16382955	C18.080.655	TWGNF	TWGNF-Mouse-2	f	SNP		G	G	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	G
ss39645524	mCV23909299	ABI	CRAMUS_MOUSE	r	SNP		C	C	T						T
ss147616986	ENSMUSSNP2565123	ENSEMBL	ENSEMBL_Sanger	r	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	DDK/Pas	FVB/NJ	I/LnJ	JF1/Ms	KK/HlJ	LG/J	LP/J	MA/MyJ	MAI/Pas	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZB/BlNJ	NZW/LacJ	PERA/EiJ	PL/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs4231986					SNP	G	G	G	A	A	A	G	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395034	R75289_16	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603926 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	659 bp proximal
Gm58829	predicted gene, 58829	163 bp upstream
Mbp	myelin basic protein	164 bp downstream
Rr541827	regulatory region 541827	1666 bp distal
Tssr152152	transcription start site region 152152	1676 bp downstream
Tssr152153	transcription start site region 152153	1552 bp downstream
Tssr152154	transcription start site region 152154	1529 bp downstream
Tssr152155	transcription start site region 152155	1493 bp downstream
Tssr152156	transcription start site region 152156	1424 bp downstream
Tssr152157	transcription start site region 152157	1346 bp downstream
Tssr152158	transcription start site region 152158	1309 bp downstream
Tssr152159	transcription start site region 152159	1285 bp downstream
Tssr152160	transcription start site region 152160	1239 bp downstream
Tssr152161	transcription start site region 152161	1223 bp downstream
Tssr152162	transcription start site region 152162	1202 bp downstream
Tssr152163	transcription start site region 152163	1185 bp downstream
Tssr152164	transcription start site region 152164	1140 bp downstream
Tssr152165	transcription start site region 152165	1067 bp downstream
Tssr152166	transcription start site region 152166	1031 bp downstream
Tssr152167	transcription start site region 152167	999 bp downstream
Tssr152168	transcription start site region 152168	970 bp downstream
Tssr152169	transcription start site region 152169	917 bp downstream
Tssr152170	transcription start site region 152170	809 bp downstream
Tssr152171	transcription start site region 152171	765 bp downstream
Tssr152172	transcription start site region 152172	662 bp downstream
Tssr152173	transcription start site region 152173	647 bp downstream
Tssr152174	transcription start site region 152174	613 bp downstream
Tssr152175	transcription start site region 152175	578 bp downstream
Tssr152176	transcription start site region 152176	389 bp downstream
Tssr152177	transcription start site region 152177	209 bp downstream
Tssr154083	transcription start site region 154083	1571 bp upstream
Tssr154084	transcription start site region 154084	1517 bp upstream
Tssr154085	transcription start site region 154085	1260 bp upstream
Tssr154086	transcription start site region 154086	714 bp upstream
Tssr154087	transcription start site region 154087	493 bp upstream
Tssr154088	transcription start site region 154088	464 bp upstream
Tssr154089	transcription start site region 154089	346 bp upstream
Tssr154090	transcription start site region 154090	286 bp upstream