rs4231988 SNP Detail

Summary

• ID
  rs4231988
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603856 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GCGCGTGACC CGCTTTTCTG
  CAGTGTTTCC TAGGACAATG GCTTTGAAAA GTGTCCTCAG AGTGACTGAA AATCCTTTTC
  CTTGTGTGTT GTGGGTCACT GTCCCACATC ACCTCTACTC CATCTTCTTG ATTTATCAAT
  GCATGGCCTC CTCAACGTGC CCCTTGAGGT ATTCTCCCAA GGGCACCGTG AAGCAACCCG
  S
  TGCCCCTGAG GAAGAGCCCT CCACCCTGCG ACGAGGCTGT GCTTCACTCG GGCTCACGCC
  TACAGGCTGC CGTGCAAAAT GAGACACCTG GGCAAAGATC ATTGCAAGTT TATTATTTTA
  TTTCAATATT CAAGAATAGT AGGTGCTTCT GTCCAGCCAT ACTGCAGCTG CGCTGTCTGG
  ACGAAGCCAT GGGCAAGGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395036	R75289_86	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231988					SNP	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395036	R75289_86	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603856 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	729 bp proximal
Gm58829	predicted gene, 58829	93 bp upstream
Mbp	myelin basic protein	94 bp downstream
Rr541827	regulatory region 541827	1596 bp distal
Tssr152152	transcription start site region 152152	1606 bp downstream
Tssr152153	transcription start site region 152153	1482 bp downstream
Tssr152154	transcription start site region 152154	1459 bp downstream
Tssr152155	transcription start site region 152155	1423 bp downstream
Tssr152156	transcription start site region 152156	1354 bp downstream
Tssr152157	transcription start site region 152157	1276 bp downstream
Tssr152158	transcription start site region 152158	1239 bp downstream
Tssr152159	transcription start site region 152159	1215 bp downstream
Tssr152160	transcription start site region 152160	1169 bp downstream
Tssr152161	transcription start site region 152161	1153 bp downstream
Tssr152162	transcription start site region 152162	1132 bp downstream
Tssr152163	transcription start site region 152163	1115 bp downstream
Tssr152164	transcription start site region 152164	1070 bp downstream
Tssr152165	transcription start site region 152165	997 bp downstream
Tssr152166	transcription start site region 152166	961 bp downstream
Tssr152167	transcription start site region 152167	929 bp downstream
Tssr152168	transcription start site region 152168	900 bp downstream
Tssr152169	transcription start site region 152169	847 bp downstream
Tssr152170	transcription start site region 152170	739 bp downstream
Tssr152171	transcription start site region 152171	695 bp downstream
Tssr152172	transcription start site region 152172	592 bp downstream
Tssr152173	transcription start site region 152173	577 bp downstream
Tssr152174	transcription start site region 152174	543 bp downstream
Tssr152175	transcription start site region 152175	508 bp downstream
Tssr152176	transcription start site region 152176	319 bp downstream
Tssr152177	transcription start site region 152177	139 bp downstream
Tssr154083	transcription start site region 154083	1501 bp upstream
Tssr154084	transcription start site region 154084	1447 bp upstream
Tssr154085	transcription start site region 154085	1190 bp upstream
Tssr154086	transcription start site region 154086	644 bp upstream
Tssr154087	transcription start site region 154087	423 bp upstream
Tssr154088	transcription start site region 154088	394 bp upstream
Tssr154089	transcription start site region 154089	276 bp upstream
Tssr154090	transcription start site region 154090	216 bp upstream