rs4231989 SNP Detail

Summary

• ID
  rs4231989
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603785 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              ATCCTTTTCC TTGTGTGTTG
  TGGGTCACTG TCCCACATCA CCTCTACTCC ATCTTCTTGA TTTATCAATG CATGGCCTCC
  TCAACGTGCC CCTTGAGGTA TTCTCCCAAG GGCACCGTGA AGCAACCCGG TGCCCCTGAG
  GAAGAGCCCT CCACCCTGCG ACGAGGCTGT GCTTCACTCG GGCTCACGCC TACAGGCTGC
  S
  GTGCAAAATG AGACACCTGG GCAAAGATCA TTGCAAGTTT ATTATTTTAT TTCAATATTC
  AAGAATAGTA GGTGCTTCTG TCCAGCCATA CTGCAGCTGC GCTGTCTGGA CGAAGCCATG
  GGCAAGGTCG TTCAGTCACA CTGGAGGGCA AACACTCCCG TGGGACAATC TGGAGGGTTT
  TTTTCTGGAA ATTTCTTCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395037	R75289_157	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231989					SNP	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395037	R75289_157	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603785 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	800 bp proximal
Gm58829	predicted gene, 58829	22 bp upstream
Mbp	myelin basic protein	23 bp downstream
Rr541827	regulatory region 541827	1525 bp distal
Tssr152152	transcription start site region 152152	1535 bp downstream
Tssr152153	transcription start site region 152153	1411 bp downstream
Tssr152154	transcription start site region 152154	1388 bp downstream
Tssr152155	transcription start site region 152155	1352 bp downstream
Tssr152156	transcription start site region 152156	1283 bp downstream
Tssr152157	transcription start site region 152157	1205 bp downstream
Tssr152158	transcription start site region 152158	1168 bp downstream
Tssr152159	transcription start site region 152159	1144 bp downstream
Tssr152160	transcription start site region 152160	1098 bp downstream
Tssr152161	transcription start site region 152161	1082 bp downstream
Tssr152162	transcription start site region 152162	1061 bp downstream
Tssr152163	transcription start site region 152163	1044 bp downstream
Tssr152164	transcription start site region 152164	999 bp downstream
Tssr152165	transcription start site region 152165	926 bp downstream
Tssr152166	transcription start site region 152166	890 bp downstream
Tssr152167	transcription start site region 152167	858 bp downstream
Tssr152168	transcription start site region 152168	829 bp downstream
Tssr152169	transcription start site region 152169	776 bp downstream
Tssr152170	transcription start site region 152170	668 bp downstream
Tssr152171	transcription start site region 152171	624 bp downstream
Tssr152172	transcription start site region 152172	521 bp downstream
Tssr152173	transcription start site region 152173	506 bp downstream
Tssr152174	transcription start site region 152174	472 bp downstream
Tssr152175	transcription start site region 152175	437 bp downstream
Tssr152176	transcription start site region 152176	248 bp downstream
Tssr152177	transcription start site region 152177	68 bp downstream
Tssr154083	transcription start site region 154083	1430 bp upstream
Tssr154084	transcription start site region 154084	1376 bp upstream
Tssr154085	transcription start site region 154085	1119 bp upstream
Tssr154086	transcription start site region 154086	573 bp upstream
Tssr154087	transcription start site region 154087	352 bp upstream
Tssr154088	transcription start site region 154088	323 bp upstream
Tssr154089	transcription start site region 154089	205 bp upstream
Tssr154090	transcription start site region 154090	145 bp upstream