rs4231990 SNP Detail

Summary

• ID
  rs4231990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603719 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ATTAT TTTATTTCAA TATTCAAGAA
  Y
  AGTAGGTGCT TCTGTCCAGC CATAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395038	R75289_223	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231990					SNP	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395038	R75289_223	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603719 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	866 bp proximal
Mbp	myelin basic protein	mRNA-UTR
Rr541827	regulatory region 541827	1459 bp distal
Tssr152152	transcription start site region 152152	1469 bp downstream
Tssr152153	transcription start site region 152153	1345 bp downstream
Tssr152154	transcription start site region 152154	1322 bp downstream
Tssr152155	transcription start site region 152155	1286 bp downstream
Tssr152156	transcription start site region 152156	1217 bp downstream
Tssr152157	transcription start site region 152157	1139 bp downstream
Tssr152158	transcription start site region 152158	1102 bp downstream
Tssr152159	transcription start site region 152159	1078 bp downstream
Tssr152160	transcription start site region 152160	1032 bp downstream
Tssr152161	transcription start site region 152161	1016 bp downstream
Tssr152162	transcription start site region 152162	995 bp downstream
Tssr152163	transcription start site region 152163	978 bp downstream
Tssr152164	transcription start site region 152164	933 bp downstream
Tssr152165	transcription start site region 152165	860 bp downstream
Tssr152166	transcription start site region 152166	824 bp downstream
Tssr152167	transcription start site region 152167	792 bp downstream
Tssr152168	transcription start site region 152168	763 bp downstream
Tssr152169	transcription start site region 152169	710 bp downstream
Tssr152170	transcription start site region 152170	602 bp downstream
Tssr152171	transcription start site region 152171	558 bp downstream
Tssr152172	transcription start site region 152172	455 bp downstream
Tssr152173	transcription start site region 152173	440 bp downstream
Tssr152174	transcription start site region 152174	406 bp downstream
Tssr152175	transcription start site region 152175	371 bp downstream
Tssr152176	transcription start site region 152176	182 bp downstream
Tssr152177	transcription start site region 152177	2 bp downstream
Tssr154083	transcription start site region 154083	1364 bp upstream
Tssr154084	transcription start site region 154084	1310 bp upstream
Tssr154085	transcription start site region 154085	1053 bp upstream
Tssr154086	transcription start site region 154086	507 bp upstream
Tssr154087	transcription start site region 154087	286 bp upstream
Tssr154088	transcription start site region 154088	257 bp upstream
Tssr154089	transcription start site region 154089	139 bp upstream
Tssr154090	transcription start site region 154090	79 bp upstream