rs4231991 SNP Detail

Summary

• ID
  rs4231991
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603610 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                 T ACTCCATCTT CTTGATTTAT CAATGCATGG
  CCTCCTCAAC GTGCCCCTTG AGGTATTCTC CCAAGGGCAC CGTGAAGCAA CCCGGTGCCC
  CTGAGGAAGA GCCCTCCACC CTGCGACGAG GCTGTGCTTC ACTCGGGCTC ACGCCTACAG
  GCTGCCGTGC AAAATGAGAC ACCTGGGCAA AGATCATTGC AAGTTTATTA TTTTATTTCA
  ATATTCAAGA ATAGTAGGTG CTTCTGTCCA GCCATACTGC AGCTGCGCTG TCTGGACGAA
  GCCATGGGCA AGGTCGTTCA GTCACACTGG AGGGCAAACA CTCCCGTGGG ACAATCTGGA
  S
  GGTTTTTTTC TGGAAATTTC TTCCCTGCTT TTTCTCTTAC CCTCACGTTA TTGTGGCGAT
  ACATTAATCG GTGTTATCTT AAACCCACAC TCTACTCAGA GTTAGAACAG ATTAACAAGA
  TGCAGTA                                                          
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395039	R75289_332	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231991					SNP	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395039	R75289_332	TWGNF	TWGNF-Mouse-2	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603610 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	975 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	1350 bp distal
Tssr152152	transcription start site region 152152	1360 bp downstream
Tssr152153	transcription start site region 152153	1236 bp downstream
Tssr152154	transcription start site region 152154	1213 bp downstream
Tssr152155	transcription start site region 152155	1177 bp downstream
Tssr152156	transcription start site region 152156	1108 bp downstream
Tssr152157	transcription start site region 152157	1030 bp downstream
Tssr152158	transcription start site region 152158	993 bp downstream
Tssr152159	transcription start site region 152159	969 bp downstream
Tssr152160	transcription start site region 152160	923 bp downstream
Tssr152161	transcription start site region 152161	907 bp downstream
Tssr152162	transcription start site region 152162	886 bp downstream
Tssr152163	transcription start site region 152163	869 bp downstream
Tssr152164	transcription start site region 152164	824 bp downstream
Tssr152165	transcription start site region 152165	751 bp downstream
Tssr152166	transcription start site region 152166	715 bp downstream
Tssr152167	transcription start site region 152167	683 bp downstream
Tssr152168	transcription start site region 152168	654 bp downstream
Tssr152169	transcription start site region 152169	601 bp downstream
Tssr152170	transcription start site region 152170	493 bp downstream
Tssr152171	transcription start site region 152171	449 bp downstream
Tssr152172	transcription start site region 152172	346 bp downstream
Tssr152173	transcription start site region 152173	331 bp downstream
Tssr152174	transcription start site region 152174	297 bp downstream
Tssr152175	transcription start site region 152175	262 bp downstream
Tssr152176	transcription start site region 152176	73 bp downstream
Tssr152177	transcription start site region 152177	81 bp upstream
Tssr154083	transcription start site region 154083	1255 bp upstream
Tssr154084	transcription start site region 154084	1201 bp upstream
Tssr154085	transcription start site region 154085	944 bp upstream
Tssr154086	transcription start site region 154086	398 bp upstream
Tssr154087	transcription start site region 154087	177 bp upstream
Tssr154088	transcription start site region 154088	148 bp upstream
Tssr154089	transcription start site region 154089	30 bp upstream
Tssr154090	transcription start site region 154090	21 bp downstream