rs4231992 SNP Detail

Summary

• ID
  rs4231992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603608 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                               TAC TCCATCTTCT TGATTTATCA ATGCATGGCC
  TCCTCAACGT GCCCCTTGAG GTATTCTCCC AAGGGCACCG TGAAGCAACC CGGTGCCCCT
  GAGGAAGAGC CCTCCACCCT GCGACGAGGC TGTGCTTCAC TCGGGCTCAC GCCTACAGGC
  TGCCGTGCAA AATGAGACAC CTGGGCAAAG ATCATTGCAA GTTTATTATT TTATTTCAAT
  ATTCAAGAAT AGTAGGTGCT TCTGTCCAGC CATACTGCAG CTGCGCTGTC TGGACGAAGC
  CATGGGCAAG GTCGTTCAGT CACACTGGAG GGCAAACACT CCCGTGGGAC AATCTGGAGG
  K
  TTTTTTTCTG GAAATTTCTT CCCTGCTTTT TCTCTTACCC TCACGTTATT GTGGCGATAC
  ATTAATCGGT GTTATCTTAA ACCCACACTC TACTCAGAGT TAGAACAGAT TAACAAGATG
  CAGTA                                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395040	R75289_334	TWGNF	TWGNF-Mouse	f	SNP	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231992					SNP	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395040	R75289_334	TWGNF	TWGNF-Mouse-2	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603608 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	977 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	1348 bp distal
Tssr152152	transcription start site region 152152	1358 bp downstream
Tssr152153	transcription start site region 152153	1234 bp downstream
Tssr152154	transcription start site region 152154	1211 bp downstream
Tssr152155	transcription start site region 152155	1175 bp downstream
Tssr152156	transcription start site region 152156	1106 bp downstream
Tssr152157	transcription start site region 152157	1028 bp downstream
Tssr152158	transcription start site region 152158	991 bp downstream
Tssr152159	transcription start site region 152159	967 bp downstream
Tssr152160	transcription start site region 152160	921 bp downstream
Tssr152161	transcription start site region 152161	905 bp downstream
Tssr152162	transcription start site region 152162	884 bp downstream
Tssr152163	transcription start site region 152163	867 bp downstream
Tssr152164	transcription start site region 152164	822 bp downstream
Tssr152165	transcription start site region 152165	749 bp downstream
Tssr152166	transcription start site region 152166	713 bp downstream
Tssr152167	transcription start site region 152167	681 bp downstream
Tssr152168	transcription start site region 152168	652 bp downstream
Tssr152169	transcription start site region 152169	599 bp downstream
Tssr152170	transcription start site region 152170	491 bp downstream
Tssr152171	transcription start site region 152171	447 bp downstream
Tssr152172	transcription start site region 152172	344 bp downstream
Tssr152173	transcription start site region 152173	329 bp downstream
Tssr152174	transcription start site region 152174	295 bp downstream
Tssr152175	transcription start site region 152175	260 bp downstream
Tssr152176	transcription start site region 152176	71 bp downstream
Tssr152177	transcription start site region 152177	83 bp upstream
Tssr154083	transcription start site region 154083	1253 bp upstream
Tssr154084	transcription start site region 154084	1199 bp upstream
Tssr154085	transcription start site region 154085	942 bp upstream
Tssr154086	transcription start site region 154086	396 bp upstream
Tssr154087	transcription start site region 154087	175 bp upstream
Tssr154088	transcription start site region 154088	146 bp upstream
Tssr154089	transcription start site region 154089	28 bp upstream
Tssr154090	transcription start site region 154090	23 bp downstream