rs4231993 SNP Detail

Summary

• ID
  rs4231993
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82603581 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              CAAAATGAGA CACCTGGGCA
  AAGATCATTG CAAGTTTATT ATTTTATTTC AATATTCAAG AATAGTAGGT GCTTCTGTCC
  AGCCATACTG CAGCTGCGCT GTCTGGACGA AGCCATGGGC AAGGTCGTTC AGTCACACTG
  GAGGGCAAAC ACTCCCGTGG GACAATCTGG AGGGTTTTTT TCTGGAAATT TCTTCCCTGC
  W
  TTTTCTCTTA CCCTCACGTT ATTGTGGCGA TACATTAATC GGTGTTATCT TAAACCCACA
  CTCTACTCAG AGTTAGAACA GATTAACAAG ATGCAGTATT GGGCTACATC AACCATCACC
  TGCCTTCCTA GGGGTGACGG TGCCAGTGTG GGGCTCTTTG GAAGGTCTAC AGAAGGCATG
  CTAAATCAAA AGACATAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395041	R75289_361	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4231993					SNP	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395041	R75289_361	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82603581 () rs orientation: reverse

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	1004 bp proximal
Gm58829	predicted gene, 58829	within coordinates
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	1321 bp distal
Tssr152152	transcription start site region 152152	1331 bp downstream
Tssr152153	transcription start site region 152153	1207 bp downstream
Tssr152154	transcription start site region 152154	1184 bp downstream
Tssr152155	transcription start site region 152155	1148 bp downstream
Tssr152156	transcription start site region 152156	1079 bp downstream
Tssr152157	transcription start site region 152157	1001 bp downstream
Tssr152158	transcription start site region 152158	964 bp downstream
Tssr152159	transcription start site region 152159	940 bp downstream
Tssr152160	transcription start site region 152160	894 bp downstream
Tssr152161	transcription start site region 152161	878 bp downstream
Tssr152162	transcription start site region 152162	857 bp downstream
Tssr152163	transcription start site region 152163	840 bp downstream
Tssr152164	transcription start site region 152164	795 bp downstream
Tssr152165	transcription start site region 152165	722 bp downstream
Tssr152166	transcription start site region 152166	686 bp downstream
Tssr152167	transcription start site region 152167	654 bp downstream
Tssr152168	transcription start site region 152168	625 bp downstream
Tssr152169	transcription start site region 152169	572 bp downstream
Tssr152170	transcription start site region 152170	464 bp downstream
Tssr152171	transcription start site region 152171	420 bp downstream
Tssr152172	transcription start site region 152172	317 bp downstream
Tssr152173	transcription start site region 152173	302 bp downstream
Tssr152174	transcription start site region 152174	268 bp downstream
Tssr152175	transcription start site region 152175	233 bp downstream
Tssr152176	transcription start site region 152176	44 bp downstream
Tssr152177	transcription start site region 152177	110 bp upstream
Tssr154083	transcription start site region 154083	1226 bp upstream
Tssr154084	transcription start site region 154084	1172 bp upstream
Tssr154085	transcription start site region 154085	915 bp upstream
Tssr154086	transcription start site region 154086	369 bp upstream
Tssr154087	transcription start site region 154087	148 bp upstream
Tssr154088	transcription start site region 154088	119 bp upstream
Tssr154089	transcription start site region 154089	1 bp upstream
Tssr154090	transcription start site region 154090	50 bp downstream