rs4232021 SNP Detail

Summary

• ID
  rs4232021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5653096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGTCAC AGATCCCTTC
  TCACCACTTG GAGCGACTGT TTCTATCCCA ATAAATGAGA TCTTCACAAT GCCTGAGTCT
  GTGGGCACCT TAGCACCCTG AAGCTGCCAT TACATGGCAC CCAGTTTGGT AAGAACTCCT
  GATAGCTCTG CCTATATAAA CAATTTATTT CTGGGGGCAA GAGGGGCCAG AACTTTGCAA
  Y
  CAGCGCCCAC CCCACCCTCC AGCTCCTCCT TTATAAAAGA AATTTTTACA ATCACCGGTC
  CTGTACAGAA TGCTCCCCAC CCATCTTAAT GTACACAGCT GCCTGGATCC CTTTGGTCCA
  CGTGTTCAGA GCGGACCTGG GCCAGTAAGC CAGTTATCCT CGGAGTTGGC CTAGACCTGA
  GCTTGCCTTG GCACTGGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6395069	AI839539_117	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4232021					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395069	AI839539_117	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5653096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	454 bp distal
Kat5	K(lysine) acetyltransferase 5	within coordinates
Rnaseh2c	ribonuclease H2, subunit C	109 bp downstream
Rr363585	regulatory region 363585	within coordinates
Rr370434	regulatory region 370434	1109 bp downstream
Tssr154457	transcription start site region 154457	1216 bp downstream
Tssr154458	transcription start site region 154458	1152 bp downstream