rs4232022 SNP Detail

Summary

• ID
  rs4232022
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5653106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCCCTTC TCACCACTTG
  GAGCGACTGT TTCTATCCCA ATAAATGAGA TCTTCACAAT GCCTGAGTCT GTGGGCACCT
  TAGCACCCTG AAGCTGCCAT TACATGGCAC CCAGTTTGGT AAGAACTCCT GATAGCTCTG
  CCTATATAAA CAATTTATTT CTGGGGGCAA GAGGGGCCAG AACTTTGCAA CCAGCGCCCA
  Y
  CCCACCCTCC AGCTCCTCCT TTATAAAAGA AATTTTTACA ATCACCGGTC CTGTACAGAA
  TGCTCCCCAC CCATCTTAAT GTACACAGCT GCCTGGATCC CTTTGGTCCA CGTGTTCAGA
  GCGGACCTGG GCCAGTAAGC CAGTTATCCT CGGAGTTGGC CTAGACCTGA GCTTGCCTTG
  GCACTGGCCA CTAGTGGGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
ss6395070	AI839539_127	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	SPRET/EiJ
rs4232022					SNP	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395070	AI839539_127	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5653106 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10461	CpG island 10461	464 bp distal
Kat5	K(lysine) acetyltransferase 5	within coordinates
Rnaseh2c	ribonuclease H2, subunit C	119 bp downstream
Rr363585	regulatory region 363585	within coordinates
Rr370434	regulatory region 370434	1119 bp downstream
Tssr154457	transcription start site region 154457	1226 bp downstream
Tssr154458	transcription start site region 154458	1162 bp downstream