rs4232051 SNP Detail

Summary

• ID
  rs4232051
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9962465 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAATG CTTATCCTCA ATCACAAAGA
  M
  AAGAAGCTGG GTACCAAAAT TCTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6395100	AL033366_48	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	A	C	A
ss50605194	NES13645676	PERLEGEN	MM_PANEL2	r	SNP		T	T	T	T	T	T		G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4232051					SNP	A	A	A	A	A	A	A	A	C	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395100	AL033366_48	TWGNF	TWGNF-Mouse-2	f	SNP	A/C
ss50605194	NES13645676	PERLEGEN	MM_PANEL	r	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9962465 () rs orientation: reverse

Symbol	Name	Function Class
Best1	bestrophin 1	73 bp downstream
Cpgi10595	CpG island 10595	1716 bp distal
Fth1	ferritin heavy polypeptide 1	3 bp downstream
Rr543966	regulatory region 543966	1099 bp distal
Rr543967	regulatory region 543967	519 bp distal
Tssr155005	transcription start site region 155005	1983 bp downstream
Tssr155006	transcription start site region 155006	882 bp downstream
Tssr155007	transcription start site region 155007	809 bp downstream
Tssr155008	transcription start site region 155008	518 bp downstream
Tssr155009	transcription start site region 155009	172 bp downstream
Tssr155010	transcription start site region 155010	within coordinates
Tssr158137	transcription start site region 158137	864 bp upstream
Tssr158138	transcription start site region 158138	775 bp upstream
Tssr158139	transcription start site region 158139	482 bp upstream
Tssr158140	transcription start site region 158140	261 bp upstream
Tssr158141	transcription start site region 158141	233 bp upstream
Tssr158142	transcription start site region 158142	208 bp upstream
Tssr158143	transcription start site region 158143	142 bp upstream
Tssr158144	transcription start site region 158144	4 bp upstream