rs4232462 SNP Detail

Summary

• ID
  rs4232462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTATAAGT CTTTGTATTC
  CTGGGGGGGG GGGGGCAGTC AGAAATGCTT TTAGTTCCCA GAAAGAGGAG TAGTTTTCTC
  TTTTTTTTTT TTTTTTTCAC ATGTGACTAG TCTAGCAGTC ATCTAGACTC TGTCTTGCAT
  TTCTGGATGC CCATAAAATA TCGGATGTGA TTTTACTCTT AACCCAGTTA TTTGGGGATT
  R
  CAGTTTCTAA AATTTATATT TTAGGAAGAT GGTGATGCTG GTACTAGTGG TGATGAAAAT
  GCTGCAATTA AAAAAAAAAA AACAAGTTAT TGTCTATGCA CATAAGATCT ATTTGTATAG
  GTATTTAAGC CAAAGAAGAA ATGGATTCTA AGCAGGATAT GTATTATCAT GTATACATTT
  CTTAGAATTC AGTTCAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
ss6395536	C88302_11	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	SPRET/EiJ
rs4232462					SNP	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395536	C88302_11	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303220 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1482 bp downstream
Tssr160518	transcription start site region 160518	980 bp downstream
Tssr160519	transcription start site region 160519	336 bp downstream
Tssr160520	transcription start site region 160520	272 bp downstream
Tssr160521	transcription start site region 160521	218 bp downstream
Tssr160522	transcription start site region 160522	101 bp downstream
Tssr162873	transcription start site region 162873	1333 bp upstream
Tssr162874	transcription start site region 162874	1077 bp upstream
Tssr162875	transcription start site region 162875	1054 bp upstream
Tssr162876	transcription start site region 162876	898 bp upstream
Tssr162877	transcription start site region 162877	879 bp upstream
Tssr162878	transcription start site region 162878	827 bp upstream
Tssr162879	transcription start site region 162879	721 bp upstream
Tssr162880	transcription start site region 162880	635 bp upstream
Tssr162881	transcription start site region 162881	617 bp upstream
Tssr162882	transcription start site region 162882	317 bp upstream
Tssr162883	transcription start site region 162883	60 bp downstream
Tssr162884	transcription start site region 162884	102 bp downstream
Tssr162885	transcription start site region 162885	146 bp downstream
Tssr162886	transcription start site region 162886	193 bp downstream
Tssr162887	transcription start site region 162887	220 bp downstream
Tssr162888	transcription start site region 162888	273 bp downstream
Tssr162889	transcription start site region 162889	303 bp downstream
Tssr162890	transcription start site region 162890	363 bp downstream
Tssr162891	transcription start site region 162891	397 bp downstream
Tssr162892	transcription start site region 162892	450 bp downstream
Tssr162893	transcription start site region 162893	554 bp downstream
Tssr162894	transcription start site region 162894	584 bp downstream
Tssr162895	transcription start site region 162895	644 bp downstream
Tssr162896	transcription start site region 162896	670 bp downstream
Tssr162897	transcription start site region 162897	697 bp downstream
Tssr162898	transcription start site region 162898	721 bp downstream
Tssr162899	transcription start site region 162899	867 bp downstream
Tssr162900	transcription start site region 162900	877 bp downstream
Tssr162901	transcription start site region 162901	908 bp downstream
Tssr162902	transcription start site region 162902	990 bp downstream
Tssr162903	transcription start site region 162903	1051 bp downstream
Tssr162904	transcription start site region 162904	1152 bp downstream
Tssr162905	transcription start site region 162905	1236 bp downstream
Tssr162906	transcription start site region 162906	1240 bp downstream
Tssr162907	transcription start site region 162907	1313 bp downstream
Tssr162908	transcription start site region 162908	1337 bp downstream