rs4232465 SNP Detail

Summary

• ID
  rs4232465
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303501 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAGTTAT TGTCTATGCA
  CATAAGATCT ATTTGTATAG GTATTTAAGC CAAAGAAGAA ATGGATTCTA AGCAGGATAT
  GTATTATCAT GTATACATTT CTTAGAATTC AGTTCAAAGT TTGGCTGGAG CAGATCATTT
  CTGTCAGTAA ATAAATGTGT TCTTCTTTTT CAGCTTACAG ACTGGAACTA GAAGTGTTAG
  Y
  CACCATCATC ATAGGAGAAT AGGTCTCTGA ATTCATGCCT CCTCCCTTCA AATGACAGTT
  GGATGAATAC CAGTAGAATG GCCTGACTCT CCCTATTGGT TCATATCTTT CTCTCTACTC
  CCAGGGGAAT CAGGATACTT TGGTGTGTAA AAGAAACAGA AGGGTAATTC TGTCTCTGGC
  CATACATTCC ATTATGATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395539	C88302_291	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232465					SNP	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395539	C88302_291	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303501 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1763 bp downstream
Tssr160518	transcription start site region 160518	1261 bp downstream
Tssr160519	transcription start site region 160519	617 bp downstream
Tssr160520	transcription start site region 160520	553 bp downstream
Tssr160521	transcription start site region 160521	499 bp downstream
Tssr160522	transcription start site region 160522	382 bp downstream
Tssr162873	transcription start site region 162873	1614 bp upstream
Tssr162874	transcription start site region 162874	1358 bp upstream
Tssr162875	transcription start site region 162875	1335 bp upstream
Tssr162876	transcription start site region 162876	1179 bp upstream
Tssr162877	transcription start site region 162877	1160 bp upstream
Tssr162878	transcription start site region 162878	1108 bp upstream
Tssr162879	transcription start site region 162879	1002 bp upstream
Tssr162880	transcription start site region 162880	916 bp upstream
Tssr162881	transcription start site region 162881	898 bp upstream
Tssr162882	transcription start site region 162882	598 bp upstream
Tssr162883	transcription start site region 162883	208 bp upstream
Tssr162884	transcription start site region 162884	143 bp upstream
Tssr162885	transcription start site region 162885	107 bp upstream
Tssr162886	transcription start site region 162886	87 bp upstream
Tssr162887	transcription start site region 162887	49 bp upstream
Tssr162888	transcription start site region 162888	within coordinates
Tssr162889	transcription start site region 162889	22 bp downstream
Tssr162890	transcription start site region 162890	82 bp downstream
Tssr162891	transcription start site region 162891	116 bp downstream
Tssr162892	transcription start site region 162892	169 bp downstream
Tssr162893	transcription start site region 162893	273 bp downstream
Tssr162894	transcription start site region 162894	303 bp downstream
Tssr162895	transcription start site region 162895	363 bp downstream
Tssr162896	transcription start site region 162896	389 bp downstream
Tssr162897	transcription start site region 162897	416 bp downstream
Tssr162898	transcription start site region 162898	440 bp downstream
Tssr162899	transcription start site region 162899	586 bp downstream
Tssr162900	transcription start site region 162900	596 bp downstream
Tssr162901	transcription start site region 162901	627 bp downstream
Tssr162902	transcription start site region 162902	709 bp downstream
Tssr162903	transcription start site region 162903	770 bp downstream
Tssr162904	transcription start site region 162904	871 bp downstream
Tssr162905	transcription start site region 162905	955 bp downstream
Tssr162906	transcription start site region 162906	959 bp downstream
Tssr162907	transcription start site region 162907	1032 bp downstream
Tssr162908	transcription start site region 162908	1056 bp downstream