rs4232488 SNP Detail

Summary

• ID
  rs4232488
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:21354484 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              GTGTTAAGAA TGAGTTCTGT
  GGACCTGGGC TTGCTTTAAA TCACCTTCAC AGACTCTTAT ACATTCTGGA ACTGTGCCCA
  GAAATGCAGA TTCAAACTAC TCCCCAGGGA GTCTTTGTTC TGACAAGTTC CTTGTTGGAC
  ACCAAACTTG CCATTTGCTG GGTCTGTTTA CCCCCAAGAA GGCATCAAAC TTCCAGTCTG
  W
  CATAACCTTT TCCCATGCCA GTTTGCACTT TATTACAAAG TTAAAGAATT AAAGAATGCT
  CTCTTTTTCA GGGTCAAAGA GATATTTTGG GACGAAGCCC AGAACAAAAG CATGAATAAT
  TAAACTCAAG TCATCATTGA ATATATCAAA GCACCATGTT CAAAAGGTTA AAAATTTAAA
  AAGTGACCTT TACGTAGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395562	AW107640_396	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232488					SNP	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395562	AW107640_396	TWGNF	TWGNF-Mouse-2	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:21354484 () rs orientation: reverse

Symbol	Name	Function Class
Agtr2	angiotensin II receptor, type 2	within coordinates
Rr9669	regulatory region 9669	884 bp distal
Tssr160708	transcription start site region 160708	910 bp downstream