rs4232520 SNP Detail

Summary

• ID
  rs4232520
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73333486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGAGAA GGAAGGGACA
  CTCTTAGGCA GGGGCCCCCT TCTCACCTCT CAGGGAGGGA ACAGAGCAGG TAGTCAAGCA
  AATAGTTGGG TAGGAGAACA GGTTTCTTGG TCATAGGTAC AGAAAGAAGA CTCAATTGGT
  CCCTTGGATG GGCTACTACT TGCCCACTGC TCACAAACCT CATCAGGGAT AGCTGTCAGC
  S
  AGGTCATTCT ACCTGAGCTA CTGCTACAAG GTTTGTCCTT GGGTGGCCTG TAGACAAGAA
  GAGAAGGTAT TGGCCAGGAT TCAAGCACAG CTAAACTTAA CTAGATGTTT CTTGTATATA
  GCAGAAGAAG GACCCCCAAG ACCTGACCAT TAACCCCCAG TGTCAGGGCC TACCTGCTTC
  TCTAATCTTT TTTGCCTTGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6395595	AW107266_31	TWGNF	TWGNF-Mouse	f	SNP	C		C		C		C	C	G	C
ss38363530	NES09697854	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	C	C	C		G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4232520					SNP	C	C	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395595	AW107266_31	TWGNF	TWGNF-Mouse-2	f	SNP	C/G
ss38363530	NES09697854	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73333486 () rs orientation: forward

Symbol	Name	Function Class
B230340J04Rik	RIKEN cDNA B230340J04 gene	1143 bp upstream
Tafazzin	tafazzin, phospholipid-lysophospholipid transacylase	within coordinates