rs4232521 SNP Detail

Summary

• ID
  rs4232521
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:73333837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCCCCAG TGTCAGGGCC
  TACCTGCTTC TCTAATCTTT TTTGCCTTGT CATCCTCTAT ATCCTGGGAT CTGGGTTTTA
  ATGTTTTTAG AGTAATAAAA CATTTGTGTT GTGCCACCAT ACCTCTGTCT TCTGTGTAGG
  AATGCAGATG GGAAGCACCT TGCTGAACAA GAAACAGGAC CATGTGCCTG GATACAGTGA
  R
  ATTATTTTAG TAGTTGGACA TTGGAATCTC ACTGTGCACT GGCCACTCAA GTCTTTTGCT
  ATCACCTGTA AGCCAAATGG CAATGTGGTG GAATTCATAA AGGTGATAAA ACAAAGCTGG
  GCGGTGGTGG CACACACCTT TGATCCCAGC ACTTGGGAGG CAGAGGCAGG CGGATTTCTG
  AGTTCCATGC CAGCCTGGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss6395596	AW107266_382	TWGNF	TWGNF-Mouse	f	SNP	A		A		A		A	A	G	A
ss38363527	NES09697857	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs4232521					SNP	A	A	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395596	AW107266_382	TWGNF	TWGNF-Mouse-2	f	SNP	A/G
ss38363527	NES09697857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73333837 () rs orientation: forward

Symbol	Name	Function Class
B230340J04Rik	RIKEN cDNA B230340J04 gene	792 bp upstream
Rr6109	regulatory region 6109	1237 bp distal
Rr7767	regulatory region 7767	1889 bp distal
Tafazzin	tafazzin, phospholipid-lysophospholipid transacylase	80 bp downstream