rs4232535 SNP Detail

Summary

• ID
  rs4232535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788750 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                               TGGT
  TTCCTGCTTC AACAATGCTT GAACTGAACA GGTGCTTGAC TGACCCCCTC CAACCCCCAC
  Y
  GGCCACTTCG AGCCTGAGCC CTTTGCAACT TCCTCACTCT GCAGCTCCAG TGTCTCCACT
  CAGCCTCACC CCACCACCAC CATGACCACC ATGTCTCCCT CGCAATTGTT CCAGAACTAC
  CACCAGAACG CAAAGGCTGC CATCAACCTG CCAGATCAAC CTGGAGTTGT ATGCCTCCTA
  CATCTGTCTG TCTATGTCTT GCTATTTTGA CAGAGATGAT GTGGCTCTGA AGAACTTTCC
  AAAATACTTT CTCCACCAAT CTCATGAGGA GAGGGAGCAT GATGAGAAAC TGATAAAGCT
  GCAGAACCAA CAAGG                                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395610	AL022624_65	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232535					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395610	AL022624_65	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788750 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	82 bp upstream
Tssr161463	transcription start site region 161463	433 bp downstream
Tssr161464	transcription start site region 161464	414 bp downstream
Tssr161465	transcription start site region 161465	390 bp downstream
Tssr161466	transcription start site region 161466	361 bp downstream
Tssr161467	transcription start site region 161467	272 bp downstream
Tssr161468	transcription start site region 161468	201 bp downstream
Tssr163758	transcription start site region 163758	424 bp upstream
Tssr163759	transcription start site region 163759	310 bp upstream
Tssr163760	transcription start site region 163760	159 bp upstream
Tssr163761	transcription start site region 163761	87 bp downstream