rs4232536 SNP Detail

Summary

• ID
  rs4232536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788745 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                          TGGTTTCCT
  GCTTCAACAA TGCTTGAACT GAACAGGTGC TTGACTGACC CCCTCCAACC CCCACTGGCC
  R
  CTTCGAGCCT GAGCCCTTTG CAACTTCCTC ACTCTGCAGC TCCAGTGTCT CCACTCAGCC
  TCACCCCACC ACCACCATGA CCACCATGTC TCCCTCGCAA TTGTTCCAGA ACTACCACCA
  GAACGCAAAG GCTGCCATCA ACCTGCCAGA TCAACCTGGA GTTGTATGCC TCCTACATCT
  GTCTGTCTAT GTCTTGCTAT TTTGACAGAG ATGATGTGGC TCTGAAGAAC TTTCCAAAAT
  ACTTTCTCCA CCAATCTCAT GAGGAGAGGG AGCATGATGA GAAACTGATA AAGCTGCAGA
  ACCAACAAGG                                                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395611	AL022624_70	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232536					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395611	AL022624_70	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788745 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	77 bp upstream
Tssr161463	transcription start site region 161463	428 bp downstream
Tssr161464	transcription start site region 161464	409 bp downstream
Tssr161465	transcription start site region 161465	385 bp downstream
Tssr161466	transcription start site region 161466	356 bp downstream
Tssr161467	transcription start site region 161467	267 bp downstream
Tssr161468	transcription start site region 161468	196 bp downstream
Tssr163758	transcription start site region 163758	419 bp upstream
Tssr163759	transcription start site region 163759	305 bp upstream
Tssr163760	transcription start site region 163760	154 bp upstream
Tssr163761	transcription start site region 163761	92 bp downstream