rs4232539 SNP Detail

Summary

• ID
  rs4232539
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788714 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                        TGGTTTCCTG CTTCAACAAT GCTTGAACTG AACAGGTGCT
  TGACTGACCC CCTCCAACCC CCACTGGCCA CTTCGAGCCT GAGCCCTTTG CAACTTCCTC
  R
  CTCTGCAGCT CCAGTGTCTC CACTCAGCCT CACCCCACCA CCACCATGAC CACCATGTCT
  CCCTCGCAAT TGTTCCAGAA CTACCACCAG AACGCAAAGG CTGCCATCAA CCTGCCAGAT
  CAACCTGGAG TTGTATGCCT CCTACATCTG TCTGTCTATG TCTTGCTATT TTGACAGAGA
  TGATGTGGCT CTGAAGAACT TTCCAAAATA CTTTCTCCAC CAATCTCATG AGGAGAGGGA
  GCATGATGAG AAACTGATAA AGCTGCAGAA CCAACAAGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395614	AL022624_101	TWGNF	TWGNF-Mouse	f	SNP	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232539					SNP	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395614	AL022624_101	TWGNF	TWGNF-Mouse-2	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788714 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	46 bp upstream
Tssr161463	transcription start site region 161463	397 bp downstream
Tssr161464	transcription start site region 161464	378 bp downstream
Tssr161465	transcription start site region 161465	354 bp downstream
Tssr161466	transcription start site region 161466	325 bp downstream
Tssr161467	transcription start site region 161467	236 bp downstream
Tssr161468	transcription start site region 161468	165 bp downstream
Tssr163758	transcription start site region 163758	388 bp upstream
Tssr163759	transcription start site region 163759	274 bp upstream
Tssr163760	transcription start site region 163760	123 bp upstream
Tssr163761	transcription start site region 163761	123 bp downstream