rs4232540 SNP Detail

Summary

• ID
  rs4232540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788713 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GGTTTCCTGC TTCAACAATG CTTGAACTGA ACAGGTGCTT
  GACTGACCCC CTCCAACCCC CACTGGCCAC TTCGAGCCTG AGCCCTTTGC AACTTCCTCA
  Y
  TCTGCAGCTC CAGTGTCTCC ACTCAGCCTC ACCCCACCAC CACCATGACC ACCATGTCTC
  CCTCGCAATT GTTCCAGAAC TACCACCAGA ACGCAAAGGC TGCCATCAAC CTGCCAGATC
  AACCTGGAGT TGTATGCCTC CTACATCTGT CTGTCTATGT CTTGCTATTT TGACAGAGAT
  GATGTGGCTC TGAAGAACTT TCCAAAATAC TTTCTCCACC AATCTCATGA GGAGAGGGAG
  CATGATGAGA AACTGATAAA GCTGCAGAAC CAACAAGG                        
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395615	AL022624_102	TWGNF	TWGNF-Mouse	f	SNP	C	C	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232540					SNP	C	C	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395615	AL022624_102	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788713 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	45 bp upstream
Tssr161463	transcription start site region 161463	396 bp downstream
Tssr161464	transcription start site region 161464	377 bp downstream
Tssr161465	transcription start site region 161465	353 bp downstream
Tssr161466	transcription start site region 161466	324 bp downstream
Tssr161467	transcription start site region 161467	235 bp downstream
Tssr161468	transcription start site region 161468	164 bp downstream
Tssr163758	transcription start site region 163758	387 bp upstream
Tssr163759	transcription start site region 163759	273 bp upstream
Tssr163760	transcription start site region 163760	122 bp upstream
Tssr163761	transcription start site region 163761	124 bp downstream