rs4232541 SNP Detail

Summary

• ID
  rs4232541
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  111
• Last Updated in dbSNP Build
  111
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:89788710 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                   TGGT TTCCTGCTTC AACAATGCTT GAACTGAACA GGTGCTTGAC
  TGACCCCCTC CAACCCCCAC TGGCCACTTC GAGCCTGAGC CCTTTGCAAC TTCCTCACTC
  Y
  GCAGCTCCAG TGTCTCCACT CAGCCTCACC CCACCACCAC CATGACCACC ATGTCTCCCT
  CGCAATTGTT CCAGAACTAC CACCAGAACG CAAAGGCTGC CATCAACCTG CCAGATCAAC
  CTGGAGTTGT ATGCCTCCTA CATCTGTCTG TCTATGTCTT GCTATTTTGA CAGAGATGAT
  GTGGCTCTGA AGAACTTTCC AAAATACTTT CTCCACCAAT CTCATGAGGA GAGGGAGCAT
  GATGAGAAAC TGATAAAGCT GCAGAACCAA CAAGG                           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
ss6395616	AL022624_105	TWGNF	TWGNF-Mouse	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	SPRET/EiJ
rs4232541					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss6395616	AL022624_105	TWGNF	TWGNF-Mouse-2	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:89788710 () rs orientation: reverse

Symbol	Name	Function Class
Fth1-ps	ferritin heavy polypeptide 1, pseudogene	42 bp upstream
Tssr161463	transcription start site region 161463	393 bp downstream
Tssr161464	transcription start site region 161464	374 bp downstream
Tssr161465	transcription start site region 161465	350 bp downstream
Tssr161466	transcription start site region 161466	321 bp downstream
Tssr161467	transcription start site region 161467	232 bp downstream
Tssr161468	transcription start site region 161468	161 bp downstream
Tssr163758	transcription start site region 163758	384 bp upstream
Tssr163759	transcription start site region 163759	270 bp upstream
Tssr163760	transcription start site region 163760	119 bp upstream
Tssr163761	transcription start site region 163761	127 bp downstream